Cytoderm and Plant Resistance Lab
  publication

Publications 

  1. Yang H, Benatti MR, Karve RA, Fox A, Meilan R, Carpita NC, McCann MC. (2020). Rhamnogalacturonan-I is a determinant of cell-cell adhesion in poplar wood. Plant Biotechnol J.  18: 1027-1040. (IF 8.154,Top10%)
  2. Liu D, Dhital S, Wu P, Chen X-D, Gidley MJ. (2020). In Vitro Digestion of Apple Tissue Using a Dynamic Stomach Model: Grinding and Crushing Effects on Polyphenol Bioaccessibility. Journal of Agricultural and Food Chemistry,68:574-583 (IF 4.192, Top10%)
  3. Yang H, Zhang X, Luo H, Liu B, Shiga TM, Li X, Kim JI, Rubinelli P, Overton JC, Subramanyam V, Cooper BR, Mo H, Abu-Omar MM, Chapple C, Donohoe BS, Makowski L, Mosier NS, McCann MC, Carpita NC, Meilan R.(2019) Overcoming cellulose recalcitrance in woody biomass for the lignin-first biorefinery. Biotechnol Biofuels. 12:171. (IF 5.45)
  4. Yang H, Benatti MR, Karve RA, Fox A, Meilan R, Carpita NC, McCann MC. (2019) Rhamnogalacturonan-I is a determinant of cell-cell adhesion in poplar wood. Plant Biotechnol J. doi: 10.1111/pbi.13271. (IF 6.84)
  5. Liu D, Lopez-Sanchez P, Martinez-Sanz M, Gilbert EP, Gidley MJ. (2019) Adsorption isotherm studies on the interaction between polyphenols and apple cell walls: Effects of variety, heating and drying. Food Chem. 282:58-66. (IF 5.19)
  6. Liu D, Lopez-Sanchez P, Gidley MJ. (2019) Cellular barriers in apple tissue regulate polyphenol release under different food processing and in vitro digestion conditions. Food Funct., 2019,10, 3008-3017. (IF 3.62)
  7. Wang H-R, Bi X-M, Fang Z-J, Yang H, Gu H-Y, Sun L-J, Bao N. (2019). Real time sensing of salicylic acid in infected tomato leaves using carbon tape electrodes modified with handed pencil trace . Sensors and Actuators B: 286: 104-110.（IF 5.67）
  8. Shiga TM, Xiao W, Yang H, Zhang X, Olek AT, Donohoe BS, Liu J, Makowski L, Hou T, McCann MC, Carpita NC, Mosier NS. (2017) Enhanced rates of enzymatic saccharification and catalytic synthesis of biofuel substrates in gelatinized cellulose generated by trifluoroacetic acid. Biotechnol Biofuels. 10:310. doi: 10.1186/s13068-017-0999-2
  9. Kong Q, Ma W, Yang H, Ma G, Mantyla JJ, Benning C. (2017) The Arabidopsis WRINKLED1 transcription factor affects auxin homeostasis in roots. J. of Experimental Botany. 68: 4627-4634.
  10. Sun L-J, Xie Y, Yan Y-F, Yang H, Gu H-Y, Bao N. (2017) Paper-based analytical devices for direct electrochemical detection of free IAA and SA in plant samples with the weight of several milligrams. Sensors and Actuators B: 247: 336-342.
  11. Yang H, Wei H, Ma G, Antunes M, Cox J, Zhang X, Liu X, Himmel ME, Tucker MP, McCann MC, Murphy AS, Peer WA. (2016) Cell wall targeted in planta delivery of iron enhances both biomass conversion and nutrition in Arabidopsis and rice. Plant Biotechnology J. 14(10): 1998-2009.
  12. Wei H*, Yang H*, Ciesielski PN, Donohoe BS, McCann MC, Murphy AS, Peer WA, Ding S-Y, Himmel ME, Tucher MP. (2014) Transgenic ferritin overproduction largely enhances thermochemical pretreatments in Arabidopsis. Biomass and Bioenergy. 72: 55-56 (*equal contribution)
  13. Yang H, Zhang X, Gaxiola RA, Xu G, Peer WA, Murphy AS. (2014) Overexpression of the Arabidopsis proton-pyrophosphatase AVP1 enhances transplant survival, root mass, and fruit development under limiting phosphorus conditions. J. of Experimental Botany. 65: 3045-3053.
  14. Yang H, Richter GL, Wang X, M？odzińska E, Carraro N, Lin JE, Chao D, Peer WA, Murphy AS. (2013) Sterols and sphingolipids differentially function in trafficking of the Arabidopsis ABCB19 auxin transporter. Plant J. 74(1):37-47.
  15. Christie JM*, Yang H*, Richter G*, Sullivan S*, Thomson CE, Lin J, Titapiwatanakun B, Ennis M, Kaiserli E, Lee OR, Adamec J, Peer WA, Murphy AS. (2011) phot1 inhibition of ABCB19 primes lateral auxin fluxes in the shoot apex required for phototropism. PloS Biology. 9: e1001076. (*equal contribution)Yang H, Murphy AS. (2009) Functional expression and characterization of Arabidopsis ABCB, AUX1 and PIN auxin transporters in Schizosaccharomyces pombe. Plant J. 59: 179-91.
  16. Yang H, Knapp J, Koirala P, Rajagopal D, Peer WA, Silbart LK, Murphy A, Gaxiola RA. (2007) Enhanced phosphorus nutrition in monocots and dicots over-expressing a phosphorus-responsive type I H+-pyrophosphatase. Plant Biotechnol J. 5: 735-45.
  17. Li J*, Yang H*, Peer WA, Richter G, Blakeslee JJ, Bandyopadhyay A, Titapiwantakun B, Undurraga S, Khodakovskaya M, Krizek B, Murphy A, Gilroy S, Gaxiola RA ( 2005) Arabidopsis H+-PPase AVP1 regulates auxin mediated organ development. Science 310: 121-125. (*equal contribution)
  18. Yang H, Murphy AS. (2013) Membrane preparation, sucrose density gradients and two-phase Separation Fractionation from Five-day-old Arabidopsis seedlings. Bio-Protocol. 3: e1014.
  19. Kube？ M*, Yang H*, Richter GL*, Cheng Y, Wang X, M？odzińska E, Carraro N, Titapiwatanakun B, Petrá？ek J, Za？ímalová E, Hoyerová K, Peer WA, Murphy AS. (2012) The Arabidopsis concentration-dependent influx/efflux transporter ABCB4 regulate cellular auxin levels in the root epidermis. Plant J. 69: 640-54. (*equal contribution)
  20. Dong J, Pineros MA, Li X, Yang H, Liu Y, Murphy AS, Kochian LV, Liu D. (2016) An Arabidopsis ABC transporter mediates phosphate deficiency-induced remodeling of root architecture by modulating iron homeostasis in roots. Molecular Plant. 10(2):244-259.
  21. Lin CY, Jakes JE, Donohoe BS, Ciesielski PN, Yang H, Gleber SC, Vogt S, Ding SY, Peer WA, Murphy AS, McCann MC, Himmel ME, Tucker MP, Wei H. (2016) Directed plant cell-wall accumulation of iron: embedding co-catalyst for efficient biomass conversion. Biotechnol Biofuels. 21;9:225
  22. Kriegel A, Andrés Z, Medzihradszky A, Krüger F, Scholl S, Delang S, Patir-Nebioglu MG, Gute G, Yang H, Murphy A, Peer W, Pfeiffer A, Krebs M, Lohmann J, and Schumacher K. (2015) Job-sharing in the endomembrane system: Vacuolar acidification requires the combined activity of V-ATPase and V-PPase. Plant Cell. 27: 3383-3396.
  23. Tsuda E*, Nishimura T*, Yang H*, Yukiko Uehara, Tatsuya Sakai, Masahiko Furutani, Koshiba Tomokazu, Hiroshi Nozaki, Angus Murphy, Ken-ichiro Hayashi. (2011) Alkoxy-auxins are selective inhibitors of auxin transport mediated by PIN, ABCB, and AUX1 transporters. J Biol. Chem. 286:2354-64. (*equal contribution)
  24. Sun L-J, Feng Q-M, Yan Y-F, Pan Z-Q, Li X-H, Song F-M, Yang H, Xu J-J, Bao N, Gu H-Y. (2014) Paper-based electroanalytical devices for in situ determination of salicylic acid in living tomato leaves. Biosensors and Bioelectronics 60C: 154-160.
  25. Péret B, Swarup K, Ferguson A, Seth M, Yang Y, Dhondt S, James N, Casimiro I, Perry P, Syed A, Yang H, Reemmer J, Venison E, Howells C, Perez-Amador MA, Yun J, Alonso J, Beemster GT, Laplaze L, Murphy A, Bennett MJ, Nielsen E, Swarup R. (2012) AUX/LAX genes encode a family of auxin influx transporters that perform distinct functions during Arabidopsis development. Plant Cell. 24: 2874-85.
  26. Hildreth SB, Gehman E, Yang H, Lu R-H, Sandoe JL, Yu S, Okumoto S, Murphy AS, Jelesko JG. (2011) Tobacco nicotine uptake permease (NUP1) affects alkaloid metabolism. Proc. Natl. Acad. Sci USA. 108:18179-84.
  27. Undurragaa SF, Santosg MP, Paez-Valenciag J, Yang H, Hepler PK, Facanhaf AR, Hirschid KD, Gaxiola RA. (2012) Arabidopsis sodium dependent and independent phenotypes triggered by H+-PPase up-regulation are SOS1 dependent. Plant Science. 183: 96–105.
  28. Peer WA, Blakeslee JJ, Yang H, Murphy AS. (2011) Seven things we think we know about auxin transport. Mol. Plant. 4: 487-504.
  29. Bailly A, Yang H, Martinoia E, Geisler M, Murphy AS. (2011) Plant lessons: exploring ABCB functionality through structural modeling. Front. Plant Sci. 2: 108.
  30. R？？i？ka K, Strader LC, Bailly A, Yang H, Blakeslee J, ？angowski L, Nejedlá E, Fujita H, Ito H, Syōno K, Hejátko J, Gray WM, Martinoia E, Geisler M, Bartel B, Murphy AS, Friml J. (2010) Arabidopsis PIS1 encodes the ABCG37 transporter of auxinic compounds including the auxin precursor indole-3-butyric acid. Proc. Natl. Acad. Sci USA. 107:10749-53.
  31. Za？ímalová E, Murphy AS, Yang H, Hoyerová K, Ho？ek P. (2010) Auxin transporters: Why so many. Cold Spring Harbor Perspectives in Biology. 2: a001552.
  32. Titapiwatanakun B, Blakeslee JJ, Bandyopadhyay A, Yang H, Mravec J, Sauer M, Cheng Y, Adamec J, Nagashima A, Geisler M, Sakai T, Friml J, Peer WA, Murphy AS. (2009) ABCB19/PGP19 stabilises PIN1 in membrane microdomains in Arabidopsis. Plant J. 57: 27-44.
  33. Park S, Li J, Pittman JK, Berkowitz GA, Yang H, Undurraga S, Morris J, Hirschi KD, Gaxiola RA. (2005) Up-regulation of a vacuolar H+-PPase as a strategy to engineer drought-resistant crop plants. Proc. Natl. Acad. Sci USA 102: 18830-18835.
  34. Qianqian Li, Litao Zhang, Jianguo Liu*. Comparative transcriptome analysis at seven time points during Haematococcus pluvialis motile cell growth and astaxanthin accumulation. Aquaculture, 2019, 503:304-311.
  35. Qianqian Li, Litao Zhang, Pang Tong, Jianguo Liu*. Comparative transcriptome profiling of Kappaphycus alvarezii (Rhodophyta, Gigartinales) in response to two extreme temperature treatments: an RNA-seq-based resource for photosynthesis research. European Journal of Phycology, 2019, 54 (2): 162-174.
  36. Qianqian Li, Litao Zhang, Jianguo Liu*. Examination of carbohydrate and lipid metabolic changes during Haematococcus pluvialis non-motile cell germination using transcriptome analysis. Journal of Applied Phycology, 2018:1-12.
  37. Qianqian Li, Jianguo Liu*, Litao Zhang, Qian Liu. De Novo Transcriptome analysis of an aerial microalgaTrentepohlia jolithus: pathway description and gene discovery for carbon fixation and carotenoid biosynthesis. Plos One, 2014, 9(9): e108488.
  38. Qianqian Li, Zhaoxia Cui*, Yuan Liu, Shuangyan Wang, Chengwen Song. Three clip domain serine proteases (cSPs) and one clip domain serine protease homolog (cSPH) identified from haemocytes and eyestalk cDNA libraries of swimming crab Portunus trituberculatus. Fish & Shellfish Immunology, 2012, 32(4):565-71.
  39. Qianqian Li, Zhaoxia Cui*, Yuan Liu, Shuangyan Wang, Chengwen Song. Identification and characterization of two novel types of non-clip domain serine proteases (PtSP and PtSPH1) from cDNA haemocytes library of swimming crab Portunus trituberculatus. Fish & Shellfish Immunology, 2012, 32(5):683.
  40. Jianguo Liu*, Qianqian Li, Qian Liu, Meilin He, Litao Zhang, Yang Doris Liu, Yancong Ding, Zhen Zhang, Wei Lin, Pingping Song, Ling Li, Yuan Huang, Chunmei Han. Screening of unicellular microalgae for biofuels and bioactive products and development of a pilot platform. Algological Studies, 2014, 144(1):99-117.
  41. Zhen Zhang, Tong Pang, Qianqian Li, Litao Zhang, Ling Li, Jianguo Liu. Transcriptome sequencing and characterization for Kappaphycus alvarezii. European Journal of Phycology, 2015, 50(4): 400-407.

 

 

 

 

 

 
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